PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn287331
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 471aa    MW: 52883 Da    PI: 4.9485
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn287331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.7e-35151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+ll++i+
    Achn287331  15 FLLKTYDMVDDSSTDEIVSWSSSKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQKHLLKNIH 102
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    Achn287331 103 RRK 105
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.1E-3811104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDGTPAGGGG GPAPFLLKTY DMVDDSSTDE IVSWSSSKNS FVVWNPPEFA RLLLPTYFKH  60
NNFSSFIRQL NTYGFRKIDP ERWEFANEEF LKDQKHLLKN IHRRKPIHSH SQPQGSAADP  120
ERAAFEEEID KLSREKTTLE NNLLRFKQQS AAKPQLEDWT QRVTAMEQRQ ESLLSFLEKA  180
VQNQNFVEQL SRKLESMDFS AYNKKRRLPQ VDYSPQVPEN SFVDNQSSSR PDFGIFFHQD  240
FSVKLRLELS PADSDINFVS HSTQSSNEDG GSPQRRLLEG YPKDAQRAGG LSFAPETLEL  300
SDTGTSFTFN MDSALLHKAG GSESPRLQSL QQNLTSNEEV DGHISCQLNL TLASSSLQVD  360
KSQYSAKVPP QQGHDIGKSS ELRSNANDTE DDDGTLSSSQ EAPVKKQEPA TPQVRVNDVF  420
WEQFLTERPG TSDAEEASSS FRANAYDDQD DRQSGRAVSR NGKNMEHLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-23110412129Heat shock factor protein 1
5d5v_B5e-23110412129Heat shock factor protein 1
5d5v_D5e-23110412129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868967.10.0PREDICTED: heat stress transcription factor A-5-like
RefseqXP_015870139.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-169HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLU5FKX90.0U5FKX9_POPTR; Heat Stress Transcription Factor family protein
STRINGPOPTR_0017s08630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-171HSF family protein